JERM Templates
SysMO-DB, the SysMO-PALs and other members of the SysMO consortium have been developing a collection of JERM templates to facilitate standard formats for sharing the same kinds of data through the consortium. This page lists the current templates available.
SOPs
Data
This is the general format for all SEEK templates. Each spreadsheet has multiple sheets, defining experimental metadata, organims/samples, data and optional sheets for instrument descriptions and results.
This template can be refined and/or extended to cater more specifically for different data types.
Metabolomics
This is a JERM compliant template for general use in metabolomics experiments
Transcriptomics
General Transcriptomics Templates
- General Chip-chip Array
A JERM compliant template based on a template taken from GEO
- Gene Expression ArrayExpress
A JERM compliant template based on the MAGE-TAB ArrayExpress format (metadata only)
Affymetrix
- 3’ or Whole Gene Expression array
A JERM compliant template based on a template taken from GEO
- Chip-chip Array
A JERM compliant template for Chip-chip data based on a template taken from GEO
Nimblegen
- Gene Expression
A JERM compliant template based on a template taken from GEO
Proteomics
This MIAPE template was adapted from a template offered by the PRIDE database to conform to the SEEK JERM format. For proteomics data, the “Instrument” sheet is mandatory.
This is a MIAPE-GE template for use with 2D gel data
